This is probably NOT what u wanna hear but all i can think of is kill everything and start anew next year. You couldn't even dig up your faves and put aside because if there's ONE seed or piece of root from an invasive in it you'd have them everywhere in no time. BUT you could (while killing everything off in the beds) have pots and baskets to get you through and i know you're a WSer so you'd have them (beds) filled back up in no time. That's what i'd do. Oh, and screw the neighbors. ;)

It's like eating an elephant, isn't it? One bite at a time, they say. I would just keep at it- manually pulling the weeds until the natives take over. You can transplant native flowers anywhere you like on your property.

I can certainly empathize with you as 2 years ago I had several dumptruck loads of 'topsoil' delivered to fill low spots in my extended house yard and to enlarge and raise my center bed. Unfortunately that soil was loaded with weed seeds. I spent a lot of time weeding the bed and had any visitor :D who could hold a weedwhacker cut down the others in the outer yard. My weedwhacker is too heavy for me to use. I've finally eliminated the weeds in my center bed and have mulched my entire inner house yard with a thick layer of shredded bark which I hope discourages most of the weeds. It's taken 2 years to get it to a manageable state tho.

Keep at it and don't let those weeds discourage you or win!

I don't know what laws may be in place in your area re: wild plants but if you do transplant make sure you take lots of soil with them as some need specific soil and many don't like to be moved.