They say that 90 days before harvest is the minimum time for manures. Based on that I'd say you'll be fine.

Go ahead & plant what you'd like.

We've used our poultry bedding as sheet mulch for years applied after summer crops are out through March or so before replanting summer vegetables. Squash really likes those conditions left by the manure and straw. Potatoes do well when you have material to hill up a bit, so if you have something else to add those would be the easiest.

It just depends on what you want to grow.

I always put my chicken bedding directly on the beds, too.

I doubt plants can take bacteria in and transport it to the fruits. You will wash all of your produce anyway, so I wouldn't worry.

Your concern is not can plants uptake the disease pathogens and transport them to the fruits, but that there is a real potential that disease pathogens can attach to the outsides of the fruits and if not washed properly be there to be ingested by whomever eats that fruit. If the USDA, National Institute for Health, and Center For Disease Control are correct in their assessment then if the manure was put down 90 days before harvesting of crops grown above ground, and 120 days before root crops such as potatoes should be okay.
Disease pathogens get onto the edible part of the plant, not inside.

If you have a "concern" then you shouldn't do it. Simple as that. just plant the tomatoes and beans in 5-gal. pails instead of into the ground No more needs to be said.

Not to split hairs, but Nick didn't say he had a concern, he had a question. I think it was answered pretty well (not taking credit myself - kimmsr was the one I learned the 90/120 days thing from in the first place). I get what you're saying though - I think: regardless of 'recommendations', if something makes one uncomfortable, by all means skip it. I am always in favor of gathering facts before I do whatever I want. :-]

albert.If everyone who had a concern did not do what they were concerned about we would be ruled by NAZIS for one and everyone would be a bunch of scared nancies!! I mean think about it, if everyone just stopped doing things based on a "concern" what kind of world would we be living in? We would still be eating termites with sticks and scratching our bare asses with a sedimentary rock! Serious Albert dont you think Albert Eisenstein had concerns? What if he just stopped what he was doing based on a concern? Lol

OP go with the advice of washing the fruit and veggies and following a time table of at least 90 days.

We are hearing, more and more, of food recalls due to these disease pathogens, E-Coli, Listeria, Salmonella, being found on foods and about people getting sick from ingesting them. People should be concerned about them, but knowledge is power and knowing that 1. these disease pathogens are there, and 2. they can make you very sick is part of being able to avoid contact.
So where do these disease pathogens come from? Mostly animal manures, which does not mean we should not use animal manures in our gardens. Knowing how to keep the foods we eat from getting any of these pathogens is one way to keep us from coming down with one or another. Knowing that the foods we eat might be contaminated (even those you purchase at a grocers) and need to be properly washed before eating can help keep your exposure low.
scientia potentia est

Blaze, are you familiar with Godwin's Law of the Internet? LOL